Some Bioinformatics Web Services Developed in the Bioinformatics, Data Mining, and Machine Learning Laboratory (BDML) since 2006

• MULTICOM Protein Structure Prediction Toolbox (one stop for all our protein structure prediction tools and web services, funded by NIH NIGMS. [in NIH Award RePORTER])
• NSF Career Project - Analysis, Construction and Visualization of 3D Genome Structure (2012 - 2017). [in NSF Award Search]
• RNAseq, Microarray, Proteomics, and Pathway Data Analysis Center(funded by NIH)
• My group participates in the collaborative WeFold manual protein structure prediction project in CASP10 , 2012
• APOLLO: assessing the quality of protein structure models
• DoBo: protein domain boundary prediction (our latest version)
• 2010 Automated CASP9 Evaluation: Our automated assessment of CASP9 predictions (tertiary structure predictions, quality assessment, etc.). MULTICOM series is our protein structure prediction suite.
• 2008 Automated CASP8 Evaluation: Our automated assessment of CASP8 predictions (tertiary structure predictions, quality assessment, etc.). MULTICOM series is our protein structure prediction suite.
• SeqRate: Sequence-based prediction of protein folding rates
• SoyDB: The protein sequence and structure database of soybean
• MULTICOM: High-accuracy protein 3D structure prediction server using multi-template comparative modeling
• SVMcon: Protein contact map prediction using support vector machine
• NNcon: Protein contact map prediction using 2D-recursive neural networks
• PreDisorder: Protein disorder region prediction
• DOMAC: An accurate, hybrid protein domain prediction server
• SSpro 4.1: Protein secondary structure predictor with homology analysis (one of the most widely used secondary structure prediction tools)
• HHMVE: A visual editor for profile hidden Markov model