Statistical Machine Learning Methods for Bioinformatics

 

Instructor: Jianlin Cheng

 

Course Web: http://www.cs.missouri.edu/~chengji/mlbioinfo/mlbioinfo.htm

 

Department: Department of Computer Science, University of Missouri

 

Term: Spring Semester, 2009

 

Prerequisite: introduction to bioinformatics or machine learning background upon instructor's approval

 

Objectives:

 

This course teaches statistical machine learning methods and their applications in Bioinformatics. The course intends to achieve two major goals. The first goal is to help students understand the theories of advanced machine learning methods. The second goal is to teach students how to develop Bioinformatics tools using the methods.


Topics:

 

1. Hidden Markov models and their applications in bioinformatics

 

2. Support vector machines and their applications in bioinformatics

 

3. Bayesian networks and their applications in bioinformatics

 

Homework:

 

Reading of classic papers

 

A comprehensive project of applying machine learning methods in Bioinformatics

 

Grading:


Project presentation (40%) and report (60%)

 

Disability Accommodations
If you need accommodations because of a disability, if you have emergency medical information to share with me, or if you need special arrangements in case the building must be evacuated, please inform me immediately. Please see me privately after class, or at my office. Office location:_______________ Office hours : __________ To request academic accommodations (for example, a note taker or extended time on exams), students must also register with the Office of Disability Services (http://disabilityservices.missouri.edu), S5 Memorial Union, 882-4696. It is the campus office responsible for reviewing documentation provided by students requesting academic accommodations, and for accommodations planning in cooperation with students and instructors, as needed and consistent with course requirements. For other MU resources for students with disabilities, click on "Disability Resources" on the MU homepage.

Academic Integrity
Academic integrity is fundamental to the activities and principles of a university. All members of the academic community must be confident that each person's work has been responsibly and honorably acquired, developed, and presented. Any effort to gain an advantage not given to all students is dishonest whether or not the effort is successful. The academic community regards breaches of the academic integrity rules as extremely serious matters. Sanctions for such a breach may include academic sanctions from the instructor, including failing the course for any violation, to disciplinary sanctions ranging from probation to expulsion. When in doubt about plagiarism, paraphrasing, quoting, collaboration, or any other form of cheating, consult the course instructor.