Intra-chrosomal threshold computed from the percentage: 0.0
Number of chromosomes: 1
Input file: /storage/htc/bdm/tosin/GSDB/Data/ENCSR312KHQ_DF2479FU/Extracted_Data/GSE105491_ENCFF458OWO/VC/chr3_list.txt
Intra-chromosomal threshold: 80.0
Contact distance: 6.0
Minimum distance: 0.2
Maximum distance of 2 adjacent fragments: 1.5
Maximum distance between any 2 fragments of the same chromosome: 30.0
Learning rate: 0.001
Maximum number of iteration for the optimization: 200000
Weights to enforce contacts to be satisfied (POS_MAX_DIST_WEIGHT_FILE): /storage/htc/bdm/tosin/GSDB_Scripts/Algorithms/parameters/pos_max_dist_weight_1_normal.txt
Weight to enfore minimum distance between fragments (POS_MIN_DIST_WEIGHT_FILE) : /storage/htc/bdm/tosin/GSDB_Scripts/Algorithms/parameters/pos_min_dist_weight_1_normal.txt
Weight to enfore non-contacts to be satisfied (NEG_MIN_DIST_WEIGHT_FILE) : /storage/htc/bdm/tosin/GSDB_Scripts/Algorithms/parameters/neg_min_dist_weight_1_normal.txt
Weight to enfore maximum distance between fragments (NEG_MAX_DIST_WEIGHT_FILE) : /storage/htc/bdm/tosin/GSDB_Scripts/Algorithms/parameters/neg_max_dist_weight_1_normal.txt

1 structures generated in: 9.26 minutes 
